Keep only reads with mapping qualities within a specified range
Description
Keep only reads with mapping qualities within a specified range.
Note: this filter is not designed to handle the unavailable mapping quality (255). Use MappingQualityAvailableReadFilter to explicitly filter out reads with unavailable quality.
See additional information in the following pages:
Arguments
Optional Arguments
| Argument name(s) | Type | Default value(s) | Description |
|---|---|---|---|
--maximumMappingQuality |
Integer | null | Maximum mapping quality to keep (inclusive) |
--minimumMappingQuality |
int | 10 | Minimum mapping quality to keep (inclusive) |