Filters out reads that have greater than the threshold number of N bases
Description
Filters out reads that have greater than the threshold number for unknown (N) bases.
Arguments
Optional Arguments
| Argument name(s) | Type | Default value(s) | Description |
|---|---|---|---|
--ambigFilterBases |
Integer | null | Threshold number of ambiguous bases. If null, uses threshold fraction; otherwise, overrides threshold fraction. |
--ambigFilterFrac |
double | 0.05 | Threshold fraction of ambiguous bases |